Dr. Ralf Bundschuh
Associate Professor,
Co-Director of the Interdisciplinary
Biophysics Graduate Program
Department of Physics
The Ohio State University
191 West Woodruff Avenue
Columbus, OH 43210-1117
U.S.A.
Tel.: +1 (614) 688-3978
Fax: +1 (614) 292-7557
Office: 2010 Physics Research Building
Office hours: by appointment
email:bundschuh@mps.ohio-state.edu
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Member of the Biophysics Graduate
Program and the RNA Consortium
of the Ohio State University.
[Curriculum Vitae]
[Teaching]
[Research Interests]
[List of Publications]
[Talks and Conferences]
[Software Packages]
[Personal Details]
[Curriculum Vitae]
[Teaching]
[Research Interests]
[List of Publications]
[Talks and Conferences]
[Software Packages]
In the fall quarter 2007 I am teaching
Physics H131 - Particles and Motion. The class takes place
Mondays through Fridays 2:30-3:18 (section I) and 3:30-4:18 (section II).
Information on the class is available
on the class page.
[Curriculum Vitae]
[Teaching]
[Research Interests]
[List of Publications]
[Talks and Conferences]
[Software Packages]
The biological sciences are undergoing a revolutionary change
characterized by the emergence of experimental techniques that
massively produce quantitative biological data waiting for
interpretation. The broad goal of my research is to develop new
methods to extract biological knowledge from such data. These methods
will be derived using statistical physics tools since statistical
physics provides a natural framework for the interpretation of high
volume data. I am focusing on problems involving sequence data and RNA
molecules. All the problems I study can be described in terms of
physical systems with a complex energy landscape. Thus, beyond
providing solutions of practical biological problems, the study of
these systems leads to new insights into the statistical physics of
disordered systems.
One particular area of my interest is sequence
alignment. Sequence alignment is a computational technique which
tries to identify similarities between two sequences which can be for
example DNA or protein sequences. Sequence alignment is the most
widely used computational tool in molecular biology and the
identification of any newly sequenced gene depends on the accuracy
with which the alignment can be performed. The crucial problem which
sequence alignment shares with many of the common computational tools
of molecular biology is that it will produce a result for any pair of
sequences compared. Thus, the quality of a result has to be
assessed in order to make a decision about its biological
relevance. This is usually done by quoting the probability of getting
the alignment just by chance. Being able to do this thus amounts to
characterizing the background, i.e., the alignments of
random sequences. Characterizing the behavior of a random
system is clearly the domain of statistical physics and several of its
tools can be used to tackle this problem. For sequence alignment many
universal features can be studied by using a mapping between
sequence alignment and surface growth as described by the
Kardar-Parisi-Zhang equation. Additionally a newly established link
between the Asymmetric Exclusion Process - one of the best studied
exactly solvable systems of non equilibrium statistical physics - and
sequence alignment can be exploited. In this context many explicit
results addressing the problem of assessment of the statistical
significance can be obtained while on the other hand calculating new
interesting quantities for the corresponding physical systems.
The other system of my current interest is RNA secondary
structure formation. RNA is a single-stranded heteropolymer which
can gain energy by folding onto itself and forming "base pairs"
between its monomers. Since only certain pairs of monomers are
allowed, it is a non trivial problem to find the optimal fold for a
given sequence of monomers. Thus, RNA secondary structure formation is
a problem which shows many parallels to the popular protein folding
problem - it can indeed be understood as the Hartree approximation of
the protein folding problem. While the phenomenology of RNA secondary
structure formation is very similar to protein folding, it has the
enormous advantage that the bioinformatics community has worked out an
algorithm to fold RNA in polynomial time. This makes it much more
readily available to numerical studies. Interpreting the folding
algorithm as diagrammatic equations also enables analytical approaches
to the structure formation problem. Thus, RNA secondary structures are
an ideal model system for studying concepts of heteropolymer structure
formation. Characterizing the different phases and phase transitions
involved numerically and analytically is an ongoing project. On the
other hand, quantitative modeling of recent force-extension
experiments on RNA molecules provides a foundation on which these
experiments can be interpreted and new experimental ideas be explored.
[Curriculum Vitae]
[Teaching]
[Research Interests]
[List of Publications]
[Talks and Conferences]
[Software Packages]
- M.M. Lee, M. Chan, and R. Bundschuh, "Simple is beautiful: a
straightforward approach to improve the delineation of true and false
positives in PSI-BLAST searches",
Bioinformatics (2008).
[free journal link]
- M.M. Lee, R. Bundschuh, and M. Chan, "Distant homology detection
using a LEngth and STructure-based sequence Alignment Tool (LESTAT)",
Proteins (2008)
Early view.
[Abstract]
- A. Itaya, R. Bundschuh, A.J. Archual, J.-G. Joung, Z. Fei, X. Dai,
P.X. Zhao, Y. Tang, R.S. Nelson, and B. Ding, "Small RNAs in tomato
fruit and leaf development", Biochim. Biophy. Act. - Gene Reg.
Mech. 1779 (2008)
99-107.
[Abstract]
- M. Djordjevich and R. Bundschuh, "Formation of the Open
Complex by Bacterial RNA Polymerase - a Quantitative Model",
accepted for publication in Biophys. J.
[Abstract]
- R. Bundschuh and R. Bruinsma, "Melting of Branched RNA Molecules",
accepted for publication in Phys. Rev. Lett.
[Abstract]
[PDF (139kB)]
- A. Itaya, X. Zhong, R. Bundschuh, Y. Qi, Y. Wang, R. Takeda,
A.R. Harris, C. Molina, R.S. Nelson, and B. Ding,
"A Structured Viroid RNA Serves as a Substrate for Dicer-Like Cleavage
To Produce Biologically Active Small RNAs but Is Resistant to RNA-Induced
Silencing Complex-Mediated Degradation",
Journal of Virology 91 (2007)
2980-2994.
- F. Habib, A.D. Johnson, R. Bundschuh, and D. Janies, "Large scale
genotype-phenotype correlation analysis based on phylogenetic trees",
Bioinformatics 23 (2007) 785-788
[free journal link]
- P. Messer, R. Bundschuh, M. Vingron, and P. Arndt, "Alignment
Statistics for Long-Range Correlated Genomic Sequences",
Lecture Notes in Computer Science 3909 (2006)
426-440.
- R. Bundschuh and U. Gerland, "Coupled dynamics of RNA folding
and nanopore translocation", Phys. Rev. Lett. 95 (2005)
208104/1-208104/4.
[Abstract]
[PDF (178kB)]
- N. Chia and R. Bundschuh, "Numerical Method for Accessing the
universal scaling function for a multiparticle discrete rime
asymmetric exclusion process",
Phys. Rev. E 72 (2005)
051102/1-051102/7.
[Abstract]
[PDF (195kB)]
- T. Liu and R. Bundschuh, "Quantification of the differences
between quenched and annealed averaging for RNA secondary
structures", Phys. Rev. E 72 (2005)
061905/1--061905/9.
[Abstract]
[PDF (259kB)]
- V. Guttal and R. Bundschuh, "A Model for Folding and Aggregation
in RNA Secondary Structures"
Phys. Rev. Lett. 96 (2005)
018105/1--018105/4.
[Abstract]
[PDF (155kB)]
- Y. Li, M. Lauria, and R. Bundschuh, "Suboptimal Alignments Improve
the Detection of Weak Homologs in Sequence Database Searches",
Proceedings of BIBE05, 153-160.
[Abstract]
[PDF (137kB)]
- J.M. Gott, N. Parimi, and R. Bundschuh, "Discovery of new genes and
deletion editing in Physarum
mitochondria enabled by a novel algorithm for finding edited mRNAs",
Nucleic Acids Research 33 (2005)
5063-5072.
[Abstract]
[free journal link]
- F. Habib and R. Bundschuh, "Modeling DNA unzipping in the presence
of bound proteins", Phys. Rev. E 72 (2005)
031906/1-031906/6.
[Abstract]
[PDF (352kB)]
- T. Liu and R. Bundschuh, "A model for codon position bias in
RNA editing", Phys. Rev. Lett. 95 (2005)
088101.
[Abstract]
[PDF (87kB)]
- N. Chia and R. Bundschuh, "A Practical Approach to Significance
Assessment in Alignment with Gaps",
Proceedings of the ninth annual
international conference on computational molecular biology
(RECOMB2005), S. Miyano et al., eds., Springer, (Berlin,
Germany, 2005),
474-488 and
J. Comp. Biol 13 (2006)
429-441.
[Abstract]
[PDF (189kB)]
- D. Layton and R. Bundschuh, "A Statistical Analysis of RNA
Folding Algorithms Through Thermodynamic Parameter Perturbation",
Nucleic Acids Research 33 (2005),
519-524.
[Abstract]
[free journal link]
- R. Bundschuh, "Computational prediction of RNA editing sites",
Bioinformatics 20 (2004), 3214-3220.
[Abstract]
[free journal link]
- N. Chia and R. Bundschuh, "Finite Width Model Sequence
Comparison", Phys. Rev. E 70 (2004),
021906.
[Abstract]
[PDF (296kB)]
- T. Liu and R. Bundschuh, "Analytical description of finite size
effects for RNA secondary structures",
Phys. Rev. E 69 (2004),
061912.
[Abstract]
[PDF (305kB)]
- U. Gerland, R. Bundschuh, and T. Hwa, "Translocation of structured
polynucleotides through nanopores", Phys. Biol. 1
(2004),
19-26.
[Abstract]
[PDF (460kB)]
- Y. Li, M. Lauria, and R. Bundschuh, "Using Hybrid Alignment for
Iterative Sequence Database Searches", Proceedings of HICOMB
2003 (IEEE CS press, Los Alamitos, CA) and Concurr. Comp. Pract.
Exp. 16 (2004),
841-853.
[Abstract]
[PDF (149kB)]
- U. Gerland, R. Bundschuh, and T. Hwa, "Mechanically probing the
folding pathway of single RNA molecules",
Biophys. J. 84 (2003),
2831-2840
[Abstract]
[PDF (584kB)]
- R. Bundschuh, F. Hayot, and C. Jayaprakash, "Fluctuations and slow
variables in genetic networks",
Biophys. J. 84 (2003),
1606-1615
[Abstract]
[PDF (179kB)]
- R. Bundschuh, F. Hayot, and C. Jayaprakash, "The role of dimerization
in noise reduction of simple genetic networks",
J. Theor. Biol. 220 (2003),
261-269.
[Abstract]
[PDF (159kB)]
- R. Bundschuh and T. Hwa, "Phases of the secondary structures
of RNA sequences", Europhys. Lett. 59 (2002),
903-909.
[Abstract] [Postscript (90kB)]
- R. Bundschuh and M. Lässig,
"Delocalization transitions of semi-flexible manifolds",
Phys. Rev. E 65 (2002),
061502.
[Abstract]
[Postscript (105kB)]
- Y.-K. Yu, R. Bundschuh, and T. Hwa, "Statistical Significance and
Extreme Ensemble of Gapped Local Hybrid Alignment",
Biological Evolution and Statistical Physics,
M. Lässig and A. Valeriani, eds., (2002),
3-22.
[Abstract]
[Postscript (197kB)]
- R. Bundschuh and T. Hwa, "Statistical mechanics of secondary
structures formed by random RNA sequences",
Phys. Rev. E 65 (2002),
031903.
[Abstract] [Postscript (455kB)]
- R. Bundschuh,
"Asymmetric exclusion process and extremal statistics of random
sequences",
Phys. Rev. E 65 (2002),
031911.
[Abstract]
[Postscript (143kB)]
- Y.-K. Yu, R. Bundschuh, and T. Hwa, "Hybrid Alignment: High
Performance with Universal Statistics",
Bioinformatics 18 (2002),
864-872.
[Abstract] [Postscript (113kB)]
- R. Bundschuh, "High precision simulations of the longest common
subsequence problem", Europ. Phys. J. B 22 (2001),
533-541.
[Abstract] [Postscript (152kB)]
- R. Bundschuh, "Rapid Significance Estimation in Local Sequence
Alignment with Gaps", Proceedings of the fifth annual
international conference on computational molecular biology
(RECOMB2001), S. Istrail et al., eds., ACM press, (New
York, NY, 2001), 77-85
and J. Comp. Biol. 9 (2002),
243-260.
[Abstract] [Postscript (307kB)]
- U. Gerland, R. Bundschuh, and T. Hwa, "Force-induced denaturation of
RNA", Biophys. J. 81 (2001),
1324-1332.
[Abstract]
[Postscript (169kB)]
- S. Altschul, R. Bundschuh, R. Olsen, and T. Hwa, "The estimation of
statistical parameters for local alignment score distributions",
Nucl. Acids Res. 29 (2001),
351-361.
[Abstract]
[Postscript (311kB)]
- R. Bundschuh, M. Lässig, and R. Lipowsky, "Semi-flexible
polymers with attractive interactions", Europ. Phys. J. E
3 (2000),
295--306.
[Abstract]
- R. Bundschuh,
"An analytic approach to significance assessment in local sequence
alignment with gaps", Proceedings of the fourth annual international
conference on computational molecular biology (RECOMB2000), S. Istrail
et al., eds., ACM press, (New York, NY, 2000),
86-95.
[Abstract]
[Postscript (131kB)]
- R. Bundschuh and T. Hwa,
"RNA secondary structure formation: a solvable model of
heteropolymer folding",
Phys. Rev. Lett. 83 (1999),
1479-1482.
[Abstract]
[Postscript (72kB)]
- R. Olsen, R. Bundschuh, and T. Hwa,
"Rapid Assessment of Extremal Statistics for Local Alignment with
Gaps",
Proceedings of the Seventh
International Conference on Intelligent Systems for Molecular Biology,
T. Lengauer et al., eds., AAAI Press, (Menlo Park, CA, 1999),
211-222.
[Abstract]
[Postscript (145kB)]
- R. Bundschuh, C. Cassanello, D. Serban, and M.R. Zirnbauer,
"Weak localization of disordered quasiparticles
in the mixed superconducting state",
Phys. Rev. B 59 (1999),
4382-4389.
[Abstract]
[Postscript (65kB)]
- R. Bundschuh and T. Hwa,
"An analytic study of the phase transition line in local sequence
alignment with gaps",
Discrete Applied Mathematics 104 (2000),
113-142.
[Abstract]
[Postscript (150kB)]
- R. Bundschuh, C. Cassanello, D. Serban, and M.R. Zirnbauer,
"Localization of quasiparticles in a disordered vortex",
Nucl. Phys. B 532 (1998),
689-732.
[Abstract]
[Postscript (192kB)]
- R. Bundschuh and M. Lässig, "Comment on 'Simplest possible
self-organized critical system'", Phys. Rev. Lett. 77
(1996),
4273.
[Abstract]
[Postscript (80kB)]
- R. Bundschuh and M. Lässig, "Directed polymers in high
dimensions", Phys. Rev. E 54 (1996),
304-320.
[Abstract]
[Postscript (170kB)]
- R. Everaers, R. Bundschuh, and K. Kremer, "Fluctuations and
stiffness of double-stranded polymers: railway-track model",
Europhys. Lett. 29 (1995), 263-268.
[Abstract]
[PDF (143kB)]
- U. Fastenrath, G. Adams, R. Bundschuh, T. Hermes, B. Raab, I. Schlosser,
T. Wehner, and T. Wichmann, "Universality in the 2D localization
problem", Physica A 172 (1991), 302-308.
[Abstract]
[Curriculum Vitae]
[Teaching]
[Research Interests]
[List of Publications]
[Talks and Conferences]
[Software Packages]
- Seminar of the Mathematical Biosciences
Institute, Columbus, OH, 4/15/08,
[Talk (893k)]
- RustBelt RNA
meeting, Mt. Sterling, OH, 10/19/07-10/20/07
- Department seminar, Department
of Biochemistry and Biophysics, University of Rochester, Rochester, NY,
9/12/07,
[Talk (780k)]
- Summer School Non-equilibrium in
Physics and in Biology, St Etienne de Tinee, France, 8/13/07-10/8/07,
[Talk (3.0M)]
- Workshop Computational
Methods in Biomolecular Structures and Interaction Networks,
Singapore, Singapore, 7/9/07-8/3/07,
[Talk (1.8G)]
- International Workshop Physical
and Chemical Foundations of Bioinformatics Methods, Dresden, Germany,
6/18/07-6/22/07, [Talk (912k)]
- Workshop Physics
Inspired by Biology, Minneapolis, MN, 5/4/07-5/6/07,
[Talk (241k)]
- March Meeting of the American
Physical Society 2007, Denver, CO,
3/5/07-3/9/07, [Talk (242k)]
- Evolution
of Molecular Networks program at the
Kavli Institute for Theoretical Physics,
UC Santa Barbara, Santa Barbara,
1/22/07-2/16/07,
[Talk]
- Gordon conference
on RNA editing, Ventura, CA, 1/14/07-1/19/07, [Poster (917k)]
- RustBelt RNA
meeting, Mt. Sterling, OH, 10/20/06-10/21/06
- Department seminar,
Department
of Biochemistry of OSU, Columbus, OH, 10/10/2006,
[Talk (895k)]
- Aspen Center for Physics
workshop
Phyics
inspired by Biology, Aspen, CO, 8/6/2006-8/20/2006
- Computational
approaches to functional and regulatory RNAs, Benasque, Spain,
7/16/2006-7/28/2006
- Canadian Association of
Physicists meeting, St. Catharines, ON, 6/11/2006-6/14/2006,
[Talk (272k)]
- Ohio Collaborative Conference on
Bioinformatics, Athens, OH, 6/28/2006-6/30/2006,
[Talk (786k)]
- Condensed matter seminar, Ohio
University, Athens, OH, 6/1/2006,
[Talk (884k)]
- RECOMB 2006, Venice, Italy,
4/2/2006-4/5/2006
- March Meeting of the American
Physical Society 2006, Baltimore, MD,
3/13/06-3/17/06, [Talk (145k)]
- Postdoc seminar, Mathematical
Biosciences Institute, Columbus, OH, 1/19/06,
[Talk (552k)]
- Condensed matter seminar, Case
Western Reserve University, Cleveland, OH, 11/28/05,
[Talk (884k)]
- Biophysics seminar, Rice
University, Houston, TX, 11/18/05,
[Talk (884k)]
- RustBelt RNA
meeting, Mt. Sterling, OH, 10/28/05-10/29/05
- Biology seminar, NYU,
New York, NY, 9/19/05,
[Talk (895k)]
- Conference on Electronic
Recognition of Bio-molecules, Urbana, IL, 9/7/05-9/9/05
[Talk (791k)]
- Special Physics seminar, Universität Bielefeld,
Bielefeld, Germany, 6/15/05,
[Talk (644k)]
- Seminar of the Max Planck Institute
for molecular genetics, Berlin, Germany, 6/14/05,
[Talk (321k)]
- Colloquium of the
Graduiertenkolleg
Strukturbildungsprozesse, Bielefeld, 6/9/05,
[Talk (675k)]
- Seminar of the AG
Praktische Informatik, Bielefeld, Germany, 6/6/05,
[Talk (855k)]
- CeBiTec
colloquium, Bielefeld, Germany, 5/30/05,
[Talk (321k)]
- Physics Colloquium, Virginia Tech,
Blacksburg, VA, 4/29/05
[Talk (321k)]
- Condensed matter seminar,
University of Cincinnati,
Cincinnati, OH, 4/13/05,
[Talk (644k)]
- March Meeting of the American
Physical Society 2005, Los Angeles, LA,
3/20/05-3/25/05, [Talk (370k)]
- Gordon conference
on RNA editing, Ventura, CA, 1/23/05-1/28/05
[Poster (176k)]
- RustBelt RNA
meeting, Mt. Sterling, OH, 11/19/04-11/20/04
- RECOMB 2004,
San Diego, CA, 3/27/04-3/31/04,
[Poster (100k)]
- Frühjahrstagung
des Arbeitskreises Festkörperphysik der Deutschen Physikalischen
Gesellschaft, Regensburg, Germany, 3/8/04-3/12/04,
[Talk (1933k)]
- Center for Photochemical Sciences seminar,
Bowling Green State University,
Bowling Green, OH, 1/28/04,
[Talk (187k)]
- Biophysics program seminar,
The Ohio State
University, Columbus, OH, 12/4/03,
[Talk (159k)]
- Center for Physics and Biology seminar,
Rockefeller
University, New York, NY, 11/18/03,
[Talk (638k)]
- Condensed matter and applied physics colloquium,
Harvard
University, Cambridge, MA, 11/14/03,
[Talk (644k)]
- BISTI workshop Digital
Biology: The Emerging Paradigm, Bethesda, MD, 11/6/03-11/7/03,
[PosterBlitz presentation (90k)]
- RustBelt RNA
meeting, Mt. Sterling, OH, 10/31/03-11/1/03
- Cecam workshop
Statistical
Mechanics of Random Copolymers, Lyon, France, 9/22/03-9/26/03,
[Talk (861k)]
- Alumni meeting of the
Max-Planck institute for colloid and
interface research, Potsdam, Germany,
6/20/03, [Talk (353k)]
- Second IEEE International
Workshop on High Performance Computational Biology, Nice, France,
4/22/03, [Talk (168k)]
- March Meeting of the American
Physical Society 2003, Austin, TX,
3/3/03-3/7/03, [Talk (772k)]
- Cell
Systems Biology workshop, Berlin, Germany, 11/21/02-11/23/02,
[Talk (535k)]
- New Physics and Astronomy Faculty Workshop, College Park, MD,
11/7/02-11/10/02
- RustBelt RNA
meeting, Mt. Sterling, OH, 11/1/02-11/2/02,
[Talk (64k)]
- ECCB 2002
and
satellite
meeting on bioinformatics and statistical physics, Saarbrücken,
Germany, 10/6/02-10/11/02
[Talk (540k)]
- Physics colloquium at Ohio University,
Athens, OH, 10/25/02 [Talk (262k)]
- 7th Claude Itzykson meeting,
Gif-sur-Yvette, France, 6/19/02-6/21/02
[Talk (201k)]
- Biological physics seminar at the
Max-Planck Institute for
Physics of Complex Systems, Dresden, Germany, 6/17/02
[Talk (623k)]
- Molecular biology and microbiology seminar at the
Case Western Reserve University,
Cleveland, OH, 5/13/02
[Talk (578k)]
- RECOMB 2002,
Washington, DC, 4/18/02-4/21/02
- March Meeting of the American Physical Society 2002, Indianapolis,
3/18/02-3/22/02, [Talk (127k)]
- Applied
mathematics seminar at
The Ohio State University,
Columbus, OH, 2/28/02, [Talk (797k)]
- Physics
colloquium
at The Ohio State University,
Columbus, OH, 11/6/01, [Talk (262k)]
- RustBelt RNA
meeting, Mt. Sterling, OH, 11/2/01-11/3/01,
[Talk (394k)]
- RNA group meeting
at The Ohio State University,
Columbus, OH, 10/10/2001, [Talk (380k)]
- Statistical Physics and
Biological Information program at the
Kavli Institute for Theoretical Physics,
UC Santa Barbara, Santa Barbara,
4/26/01-5/25/01
- RECOMB 2001, Montreal,
4/23/01-4/25/01, [Talk (393k)]
- Condensed matter physics
seminar, University of Cincinnati,
Cincinnati, 2/14/01, [Talk (750k)]
- Statistical Physics and
Biological Information program at the
Institute for Theoretical Physics,
UC Santa Barbara, Santa Barbara,
1/22/01-2/9/01,
Alignment
talk,
RNA
tutorial,
RNA
talk,
blackboard
lunch
- Condensed matter theory seminar,
Ohio State University,
Columbus, OH, 11/20/00, [Talk (623k)]
- Career issues seminar, University
of Michigan, Ann Arbor, 11/9/00,
[Talk (618k)]
- Workshop
Stochastics
in sequence alignment and population biology, Frankfurt,
10/12/00-10/14/00, [Talk (793k)]
- ISMB'00, San Diego,
8/19/00-8/23/00, [Poster (244k)]
- International
Workshop on Biological Evolution and Statistical Physics, Dresden,
5/10/00-5/14/00, [Talk (348k)]
- RECOMB 2000, Tokyo,
4/8/00-4/11/00, [Talk (641k)]
- Physics colloquium,
George Washington University,
3/28/00, [Talk (747k)]
- March Meeting of the American Physical Society 2000, Minneapolis,
3/20/99-3/24/99,
[Talk (143k)],
[Talk (65k)],
[Talk (230k)]
- Special physics colloqium,
University of Wisconsin at Milwaukee,
Milwaukee, 3/9/00
- Special condensed matter
physics seminar,
Ohio State University,
Columbus, OH, 3/7/00
- Special bioengineering seminar, University
of Illinois at Chicago
Bioengineering department,
2/28/00
- Special physics seminar, Iowa State
University, Department of
Physics and Astronomy, 2/25/00
- Special condensed matter seminar, MIT
Physics
department, 2/10/00
- Special seminar, MIT
Biology department, 2/9/00
- Condensed matter seminar, Harvard,
Boston, 2/3/00
- Visitor of the NCBI, Bethesda,
9/27/99-10/16/99,
[Talk (639k)]
- Nordita Workshop on Non Equilibrium Physics, Nordita, Copenhagen,
9/23/99-9/25/99,
[Talk (312k)]
- ISMB'99, Heidelberg
- Complex dynamical systems seminar at UCSD, 5/3/99,
[Talk (499k)]
- RECOMB'99, Lyon,
4/11/99-4/14/99, [Talk (112k)]
- March Meeting of the American Physical Society 1999, Atlanta,
3/21/99-3/26/99,
[Talk (146k)]
- PMMB Meeting, Mathematics and
Molecular Biology VI, Understanding Structure, Santa Fe, 1/9/99-1/14/99
[Poster (281k)]
- GCB
98, Bensberg, 10/7/98-10/10/98 [Talk]
- STATPHYS 20,
Paris, 7/20/98-7/24/98 [Poster]
- Applications of Field Theory to Statistical Physics, Bonn, 7/15/98-7/18/98
[Poster]
- RECOMB'98,
New York, 3/22/98-3/25/98 [Poster]
- March Meeting of the American Physical Society 1998, Los Angeles,
3/16/99-3/20/99 [Talk]
[Curriculum Vitae]
[Research Interests]
[List of Publications]
[Talks and Conferences]
[Software Packages]
[Curriculum Vitae]
[Teaching]
[Research Interests]
[List of Publications]
[Talks and Conferences]
[Software Packages]
[Curriculum Vitae]
[Teaching]
[Research Interests]
[List of Publications]
[Talks and Conferences]
[Software Packages]